Recent publications

  1. Lepletier, A.; Hun, ML.; Hammett, MV.; Wong, K.; Naeem, H.; Hedger, M.; Loveland, K.; Chidgey, AP. Interplay between Follistatin, Activin A, and BMP4 Signaling Regulates Postnatal Thymic Epithelial Progenitor Cell Differentiation during Aging.. Cell Reports. Cell Press. 2019, Vol. 27, Issue 13, pp. 3887-3901.e4. DOI: 10.1016/j.celrep.2019.05.045
  2. Quinn, KM.; Fox, A.; Harland, KL.; Russ, BE.; Li, J.; Nguyen, THO.; Loh, L.; Olshanksy, M.; Naeem, H.; Tsyganov, K.; Wiede, F.; Webster, R.; Blyth, C.; Sng, XYX.; Tiganis, T.; Powell, D.; Doherty, PC.; Turner, SJ.; Kedzierska, K.; La Gruta, NL. Age-Related Decline in Primary CD8(+) T Cell Responses Is Associated with the Development of Senescence in Virtual Memory CD8(+) T Cells. Cell Reports. CELL PRESS. 2018, Vol. 23, Issue 12, pp. 3512-3524. DOI: 10.1016/j.celrep.2018.05.057
  3. Hjort, L.; Martino, D.; Grunnet, LG.; Naeem, H.; Maksimovic, J.; Olsson, AH.; Zhang, C.; Ling, C.; Olsen, SF.; Saffery, R.; Vaag, AA. Gestational diabetes and maternal obesity are associated with epigenome-wide methylation changes in children. JCI Insight. AMER SOC CLINICAL INVESTIGATION INC. 2018, Vol. 3, Issue 17. DOI: 10.1172/jci.insight.122572
  4. Wang, B.; Ji, G.; Naeem, H.; Wang, J.; Kantharidis, P.; Powell, D.; Ricardo, SD. The use of targeted next generation sequencing to explore candidate regulators of TGF-β1's impact on kidney cells. Frontiers in Physiology. Frontiers Media. 2018, Vol. 9. DOI: 10.3389/fphys.2018.01755
  5. Fitzgerald, LM.; Naeem, H.; Makalic, E.; Schmidt, DF.; Dowty, JG.; Joo, JE.; Jung, C-H.; Bassett, JK.; Dugue, P-A.; Chung, J.; Lonie, A.; Milne, RL.; Wong, EM.; Hopper, JL.; English, DR.; Severi, G.; Baglietto, L.; Pedersen, J.; Giles, GG.; Southey, MC. Genome-Wide Measures of Peripheral Blood Dna Methylation and Prostate Cancer Risk in a Prospective Nested Case-Control Study. The Prostate. WILEY. 2017, Vol. 77, Issue 5, pp. 471-478. DOI: 10.1002/pros.23289
  6. Sapre, N.; Macintyre, G.; Clarkson, M.; Naeem, H.; Cmero, M.; Kowalczyk, A.; Anderson, PD.; Costello, AJ.; Corcoran, NM.; Hovens, CM. A urinary microRNA signature can predict the presence of bladder urothelial carcinoma in patients undergoing surveillance. British Journal of Cancer. NATURE PUBLISHING GROUP. 2016, Vol. 114, Issue 4, pp. 454-462. DOI: 10.1038/bjc.2015.472
  7. Hong, MKH.; Macintyre, G.; Wedge, DC.; Van Loo, P.; Patel, K.; Lunke, S.; Alexandrov, LB.; Sloggett, C.; Cmero, M.; Marass, F.; Tsui, D.; Mangiola, S.; Lonie, A.; Naeem, H.; Sapre, N.; Phal, PM.; Kurganovs, N.; Chin, X.; Kerger, M.; Warren, AY.; Neal, D.; Gnanapragasam, V.; Rosenfeld, N.; Pedersen, JS.; Ryan, A.; Haviv, I.; Costello, AJ.; Corcoran, NM.; Hovens, CM. Tracking the origins and drivers of subclonal metastatic expansion in prostate cancer. Nature Communications. NATURE PUBLISHING GROUP. 2015, Vol. 6, Issue 1. DOI: 10.1038/ncomms7605
  8. Naeem, H.; Wong, NC.; Chatterton, Z.; Hong, MKH.; Pedersen, JS.; Corcoran, NM.; Hovens, CM.; Macintyre, G. Reducing the risk of false discovery enabling identification of biologically significant genome-wide methylation status using the HumanMethylation450 array. BMC Genomics. BMC. 2014, Vol. 15, Issue 1. DOI: 10.1186/1471-2164-15-51
  9. Naeem, H.; Zimmer, R.; Tavakkolkhah, P.; Küffner, R. Rigorous assessment of gene set enrichment tests.. Bioinformatics. Oxford University Press (OUP). 2012, Vol. 28, Issue 11, pp. 1480-1486. DOI: 10.1093/bioinformatics/bts164
  10. Naeem, H.; Küffner, R.; Zimmer, R. MIRTFnet: analysis of miRNA regulated transcription factors.. PLoS One. Public Library of Science (PLoS). 2011, Vol. 6, Issue 8, pp. e22519-. DOI: 10.1371/journal.pone.0022519
  11. Naeem, H.; Küffner, R.; Csaba, G.; Zimmer, R. miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature.. BMC Bioinformatics. Springer Nature. 2010, Vol. 11, Issue 1, pp. 135-. DOI: 10.1186/1471-2105-11-135