Recent publications

  1. Jimeno Yepes A, MacKinlay A, Han B, Chen Q. Identifying Diseases, Drugs, and Symptoms in Twitter. Studies in Health Technology and Informatics. IOS Press. 2015, Vol. 216. DOI: 10.3233/978-1-61499-564-7-643
  2. Liu H, Verspoor C, Comeau DC, MacKinlay A, Wilbur WJ. Optimizing graph-based patterns to extract biomedical events from the literature. BMC BIOINFORMATICS. Biomed Central. 2015, Vol. 16. DOI: 10.1186/1471-2105-16-S16-S2
  3. Martinez D, Pitson G, MacKinlay A, Cavedon L. Cross-hospital portability, of information extraction of cancer staging information. ARTIFICIAL INTELLIGENCE IN MEDICINE. Elsevier. 2014, Vol. 62, Issue 1. DOI: 10.1016/j.artmed.2014.06.002
  4. Verspoor C, MacKinlay A, Cohn JD, Wall ME. Detection of protein catalytic sites in the biomedical literature. 2013 Pacific Symposium on Biocomputing. World Scientific Publishing Co. 2013. DOI: 10.1142/9789814447973_0042
  5. Liu H, Verspoor C, Comeau DC, MacKinlay A, Wilbur WJ. Generalizing an Approximate Subgraph Matching-based System to Extract Events in Molecular Biology and Cancer Genetics. BioNLP Shared Task 2013 Workshop. ACL Anthology. 2013.
  6. MacKinlay A, Verspoor C. Information Extraction from Medication Prescriptions Within Drug Administration Data. 4th International Louhi Workshop on Health Document Text Mining and Information Analysis (Louhi). NICTA. 2013.
  7. MacKinlay A, Verspoor C. Extracting structured information from free-text medication prescriptions using dependencies. Proceedings of the Sixth ACM International Workshop on Data and Text Mining in Biomedical Informatics. ACM Press. 2012. DOI: 10.1145/2390068.2390076
  8. MacKinlay A, Martinez D, Baldwin T. A parser-based approach to detecting modification of biomedical events. 2011 Workshop on Data infrastructurEs for Supporting Information Retrieval Evaluation, DESIRE'11, in Conjunction with the 20th ACM International Conference on Information and Knowledge Management, CIKM 2011. ACM Press. 2011.
  9. MacKinlay A, Dridan R, Flickinger D, Baldwin T. Cross-Domain effects on parse selection for precision grammars. Research on Language and Computation. 2010, Vol. 8, Issue 4. DOI: 10.1007/s11168-011-9080-7
  10. Baldwin T, Martinez D, Penman RB, Kim SN, Lui M, Wang L, MacKinlay A. Intelligent Linux Information Access by Data Mining: the ILIAD Project. NAACL HLT 2010 Workshop on Computational Linguistics in a World of Social Media. The Association for Computational Linguistics. 2010, Vol. 1, Issue 1.
  11. MacKinlay A, Baldwin T. A Baseline Approach to the RTE5 Search Pilot. Proceedings of the Text Analysis Conference (TAC 2009). National Institute of Standards and Technology. 2009.
  12. MacKinlay A, Martinez D, Baldwin T. Biomedical Event Annotation with CRFs and Precision Grammars. BioNLP 2009: Shared Task. Association for Computational Linguistics. 2009.